mzID-package	mzID-package
attrExtract	attrExtract
attrExtractNameValuePair	attrExtractNameValuePair
c,mzID-method	mzIDCollectionUtilities
c,mzIDCollection-method	mzIDCollectionUtilities
countChildren	countChildren
flatten	flatten-methods
flatten,mzID-method	flatten-methods
flatten,mzIDCollection-method	flatten-methods
flatten,mzIDpeptides-method	flatten-methods
flatten,mzIDpsm-method	flatten-methods
getAdditionalPar	getAdditionalPar
getDatabaseFile	getDatabaseFile
getDatabaseFilter	getDatabaseFilter
getDatabaseTranslation	getDatabaseTranslation
getEnzymes	getEnzymes
getFragmentTolerance	getFragmentTolerance
getMassTable	getMassTable
getModifications	getModifications
getParentTolerance	getParentTolerance
getPath	getPath
getRawFile	getRawFile
getSearchType	getSearchType
getSoftware	getSoftware
getThreshold	getThreshold
getVersion	getVersion
isRemote	isRemote
length	length
length,mzID-method	length-mzID-method
length,mzID-method	length
length,mzIDCollection-method	length-mzIDCollection-method
length,mzIDdatabase-method	length-mzIDdatabase-method
length,mzIDdatabase-method	length
length,mzIDevidence-method	length-mzIDevidence-method
length,mzIDevidence-method	length
length,mzIDparameters-method	length-mzIDparameters-method
length,mzIDparameters-method	length
length,mzIDpeptides-method	length-mzIDpeptides-method
length,mzIDpeptides-method	length
length,mzIDpsm-method	length-mzIDpsm-method
length,mzIDpsm-method	length
mzID	mzID
mzID-class	mzID-class
mzIDCollection	mzIDCollection
mzIDCollection-class	mzIDCollection-class
mzIDdatabase	mzIDdatabase
mzIDdatabase-class	mzIDdatabase-class
mzIDevidence	mzIDevidence
mzIDevidence-class	mzIDevidence-class
mzIDparameters	mzIDparameters
mzIDparameters-class	mzIDdatabase-class
mzIDpeptides	mzIDpeptides
mzIDpeptides-class	mzIDpeptides-class
mzIDpsm	mzIDpsm
mzIDpsm-class	mzIDpsm-class
prepareXML	prepareXML
show	show
show,mzID-method	show-mzID-method
show,mzIDCollection-method	show-mzIDCollection-method
show,mzIDdatabase-method	show-mzIDdatabase-method
show,mzIDevidence-method	show-mzIDevidence-method
show,mzIDparameters-method	show-mzIDparameters-method
show,mzIDpeptides-method	show-mzIDpeptides-method
show,mzIDpsm-method	show-mzIDpsm-method
type.convert	type.convert
Utilities	mzIDCollectionUtilities
[[,mzIDCollection,character,missing-method	mzIDCollectionUtilities
[[,mzIDCollection,numeric,missing-method	mzIDCollectionUtilities
