Package: mmnet
Type: Package
Title: A metagenomic pipeline for systems biology
Version: 1.2.2
Date: 2014-7-15
Author: Yang Cao, Fei Li
Maintainer: Yang Cao <yiluheihei@gmail.com>, Fei Li
 <pittacus@gmail.com>
Description: This package gives the implementations microbiome metabolic
    network constructing and analyzing. It introduces a unique metagenomic
    systems biology approach, mapping metagenomic data to the KEGG global
    metabolic pathway and constructing a systems-level network. The
    system-level network and the next topological analysis will be of great
    help to analysis the various functional properties, including regulation
    and metabolic functionality of the metagenome.
Depends: R (>= 2.14), igraph, biom
Imports: Biobase, RJSONIO, stringr, reshape2, ggplot2, KEGGREST, plyr,
        XML, RCurl, flexmix, Matrix, methods, tools
Suggests: RCytoscape, graph, knitr
VignetteBuilder: knitr
License: GPL (>= 2)
LazyLoad: yes
biocViews: GraphsAndNetwork, Sequencing, Pathways, Microbiome,
        SystemsBiology
Packaged: 2014-07-17 05:23:04 UTC; biocbuild
Built: R 3.1.1; ; 2014-07-17 10:43:29 UTC; windows
