genoset-package	genoset-package
baf2mbaf	baf2mbaf
boundingIndices	boundingIndices
boundingIndices2	boundingIndices2
boundingIndicesByChr	boundingIndicesByChr
bounds2Rle	bounds2Rle
calcGC	calcGC
chr	chr-methods
chr,GenoSet-method	chr-methods
chr,GRanges-method	chr-methods
chrIndices	chrIndices-methods
chrIndices,RangedDataOrGenoSetOrGenomicRanges-method	chrIndices-methods
chrInfo	chrInfo-methods
chrInfo,RangedDataOrGenoSetOrGenomicRanges-method	chrInfo-methods
chrNames	chrNames-methods
chrNames,GenoSet-method	chrNames-methods
chrNames,GRanges-method	chrNames-methods
chrNames,RangedData-method	chrNames-methods
chrNames<-	chrNames-methods
chrNames<-,GenoSet-method	chrNames-methods
chrNames<-,GRanges-method	chrNames-methods
chrNames<-,RangedData-method	chrNames-methods
chrOrder	chrOrder
cn2lr	cn2lr-methods
cn2lr,DataFrame-method	cn2lr-methods
cn2lr,matrix-method	cn2lr-methods
cn2lr,numeric-method	cn2lr-methods
colMeans	colMeans
colMeans,DataFrame-method	colMeans
colnames,GenoSet-method	colnames
colnames<-,GenoSet-method	colnames
dim,GenoSet-method	dim-GenoSet-method
elementLengths,GenoSet-method	elementLengths-methods
elementLengths,GRanges-method	elementLengths-methods
end,GenoSet-method	end-GenoSet-method
fake.baf	genoset-dataset
fake.cn	genoset-dataset
fake.lrr	genoset-dataset
fake.pData	genoset-dataset
featureNames,GenoSet-method	rownames-methods
featureNames,GRanges-method	rownames-methods
featureNames,RangedData-method	rownames-methods
featureNames<-,GenoSet-method	rownames-methods
featureNames<-,GRanges-method	rownames-methods
featureNames<-,RangedData-method	rownames-methods
fixSegNAs	fixSegNAs
gcCorrect	gcCorrect
genome	genome
genome,GenoSet-method	genome-GenoSet-method
genomeAxis	genomeAxis
genoPlot	genoPlot-methods
genoPlot,GenoSetOrGenomicRanges,ANY-method	genoPlot-methods
genoPlot,numeric,numeric-method	genoPlot-methods
genoPlot,numeric,Rle-method	genoPlot-methods
genoPos	genoPos-methods
genoPos,GenoSetOrGenomicRanges-method	genoPos-methods
GenoSet	GenoSet
genoset	genoset-package
GenoSet-class	GenoSet-class
genoset-datasets	genoset-dataset
genoset-defunct	genoset-defunct
genoset-deprecated	genoset-deprecated
genoset.ds	genoset-dataset
GenoSetOrGenomicRanges-class	GenoSet-class
initGenoSet	initGenoSet
isGenomeOrder	isGenomeOrder-methods
isGenomeOrder,GenoSet-method	isGenomeOrder-methods
isGenomeOrder,GRanges-method	isGenomeOrder-methods
isGenomeOrder,RangedData-method	isGenomeOrder-methods
locData	locData-methods
locData,GenoSet-method	locData-methods
locData.gr	genoset-dataset
locData<-	locData-methods
locData<-,GenoSet,GRanges-method	locData-methods
lr2cn	lr2cn
modeCenter	modeCenter
names,GenoSet-method	names-GenoSet-method
nrow,GRanges-method	nrow-GRanges-method
pos	pos-methods
pos,GenoSetOrGenomicRanges-method	pos-methods
rangeColMeans	rangeColMeans
RangedDataOrGenomicRanges-class	GenoSet-class
RangedDataOrGenoset-class	GenoSet-class
RangedDataOrGenoSetOrGenomicRanges-class	GenoSet-class
rangeSampleMeans	rangeSampleMeans
rangeSegMeanLength	rangeSegMeanLength-methods
rangeSegMeanLength,GRanges,data.frame-method	rangeSegMeanLength-methods
rangeSegMeanLength,GRanges,list-method	rangeSegMeanLength-methods
readGenoSet	readGenoSet
rownames,GenoSet-method	rownames-methods
rownames,GRanges-method	rownames-methods
rownames<-,GenoSet-method	rownames-methods
rownames<-,GRanges-method	rownames-methods
runCBS	runCBS
sampleNames,GenoSet-method	colnames
sampleNames<-,GenoSet,ANY-method	colnames
segPairTable	segPairTable-methods
segPairTable,DataFrame,DataFrame-method	segPairTable-methods
segPairTable,Rle,Rle-method	segPairTable-methods
segs2Granges	segs2Granges
segs2RangedData	segs2RangedData
segs2Rle	segs2Rle
segs2RleDataFrame	segs2RleDataFrame
segTable	segTable-methods
segTable,DataFrame-method	segTable-methods
segTable,Rle-method	segTable-methods
show,GenoSet-method	show-GenoSet-method
start,GenoSet-method	start-GenoSet-method
subsetAssayData	subsetAssayData
toGenomeOrder	toGenomeOrder-methods
toGenomeOrder,GenoSet-method	toGenomeOrder-methods
toGenomeOrder,GRanges-method	toGenomeOrder-methods
toGenomeOrder,RangedData-method	toGenomeOrder-methods
universe,GenoSet-method	universe-methods
universe,GRanges-method	universe-methods
universe<-,GenoSet-method	universe-methods
universe<-,GRanges-method	universe-methods
width,GenoSet-method	width-GenoSet-method
[,GenoSet,ANY-method	genoset-subset
[,GenoSet,character-method	genoset-subset
[,GenoSet,GenomicRanges-method	genoset-subset
[<-,GenoSet,ANY,ANY,ANY-method	genoset-subset
