Package: genoset
Type: Package
Title: Provides classes similar to ExpressionSet for copy number
        analysis
Version: 1.16.2
Date: 2011-01-15
Author: Peter M. Haverty
Maintainer: Peter M. Haverty <phaverty@gene.com>
Description: Load, manipulate, and plot copynumber and BAF data.
    GenoSet class extends eSet by adding a "locData" slot for a
    RangedData or GRanegs object. This object contains feature
    genome location data and provides for efficient subsetting on
    genome location. CNSet and BAFSet extend GenoSet and require
    assayData matrices for Copy Number (cn) or Log-R Ratio (lrr)
    and B-Allele Frequency (baf) data. Implements and provides
    convenience functions for processing of copy number and
    B-Allele Frequency data.
License: Artistic-2.0
LazyLoad: yes
Depends: R (>= 2.10), BiocGenerics (>= 0.1.6), Biobase (>= 2.15.1),
        IRanges, GenomicRanges
Imports: methods, graphics
Suggests: RUnit, DNAcopy, stats, BSgenome, Biostrings
Enhances: parallel
ByteCompile: TRUE
biocViews: Infrastructure, DataRepresentation, Microarray, SNP,
        CopyNumberVariation
Packaged: 2014-04-30 04:17:05 UTC; biocbuild
Built: R 3.1.0; i386-w64-mingw32; 2014-04-30 08:17:02 UTC; windows
Archs: i386, x64
