importClassesFrom(Biobase, eSet, NChannelSet)

importClassesFrom(gCMAP, CMAPCollection, SignedGeneSet)

importClassesFrom(GSEABase, GeneSet)

importClassesFrom(methods, character)

importMethodsFrom(AnnotationDbi, keys, sample)

## importMethodsFrom(bigmemory, ncol, nrow, print)

importMethodsFrom(Biobase, abstract, assayData, content,
                  experimentData, ExpressionSet, exprs, featureNames,
                  pData, "pData<-", phenoData, "phenoData<-",
                  sampleNames, varLabels, varMetadata, "varMetadata<-")

importMethodsFrom(BiocGenerics, "annotation<-", cbind, colnames,
                  density, duplicated, get, image, lapply, match,
                  order, paste, sapply, sort, tapply, union, unique,
                  unlist)

importMethodsFrom(gCMAP, cmapTable, effect, fisher_score, geneScores,
                  geneSign, gsealm_jg_score, induceCMAPCollection,
                  members, minSetSize, nFound, nSet, padj, plot, set,
                  signed, SignedGeneSet, trend)

importMethodsFrom(GSEABase, geneIds, geneIdType, GeneSet, intersect,
                  mapIdentifiers, setdiff)

importMethodsFrom(IRanges, as.vector, "colnames<-", gsub, ifelse,
                  "%in%", levels, mean, median, merge,
                  na.omit, rev, split, sub, subset, t, trim, which)

importFrom(Rook, Brewery, Builder, Redirect, Rhttpd, Static)

importFrom(annotate, getAnnMap)

## importFrom(bigmemoryExtras, attachAssayDataElements)

importFrom(Biobase, assayDataElement, assayDataElementNames)

importFrom(brew, brew)

importFrom(graphics, abline, box, frame, layout, legend, lines, mtext,
           par, pie, plot.new, polygon, rug, stripchart, title)

importFrom(grDevices, col2rgb, colorRampPalette, dev.off,
           png, rgb)

importFrom(GSEABase, AnnotationIdentifier, EntrezIdentifier,
           SymbolIdentifier)

importFrom(hwriter, hwrite, hwriteImage)

importFrom(methods, as, new)

importFrom(parallel, mclapply)

importFrom(stats, as.dendrogram, dist, dnorm, hclust, p.adjust, pnorm,
           rnorm)

importFrom(utils, data, installed.packages, read.delim, sessionInfo,
           URLdecode, write.table)

export(exampleCMAP)
export(examplePost)
export(gCMAPWeb)
export(load_cmaps)
export(validate_config_file)
