flowWorkspace-package	flowWorkspace-package
add	add
add,GatingHierarchy,filter-method	add
add,GatingHierarchy,filters-method	add
add,GatingHierarchy,quadGate-method	add
add,GatingSet,filter-method	add
add,GatingSet,filterList-method	add
add,GatingSet,filters-method	add
add,GatingSet,filtersList-method	add
add,GatingSet,list-method	add
add,GatingSetList,filter-method	add
add,GatingSetList,filterList-method	add
add,GatingSetList,filters-method	add
add,GatingSetList,filtersList-method	add
add,GatingSetList,list-method	add
archive	archive
booleanFilter	booleanFilter-class
booleanFilter-class	booleanFilter-class
char2booleanFilter	booleanFilter-class
clone	clone
clone,GatingSet-method	clone
clone-methods	clone
closeWorkspace	openWorkspace
closeWorkspace,flowJoWorkspace-method	openWorkspace
closeWorkspace-methods	openWorkspace
flowData	flowData-methods
flowData,GatingSet-method	flowData-methods
flowData-methods	flowData-methods
flowData<-	flowData-methods
flowData<-,GatingSet-method	flowData-methods
flowJoWorkspace-class	flowJoWorkspace-class
flowWorkspace	flowWorkspace-package
flowWorkspace.par.get	flowWorkspace.par.get
flowWorkspace.par.init	flowWorkspace.par.init
flowWorkspace.par.set	flowWorkspace.par.get
GatingHierarchy-class	GatingHierarchy-class
GatingSet	GatingSet-methods
GatingSet,character,character-method	GatingSet-methods
GatingSet,flowSet,ANY-method	GatingSet-methods
GatingSet,flowSet-method	GatingSet-class
GatingSet,GatingHierarchy,character-method	GatingSet-methods
GatingSet-class	GatingSet-class
GatingSetList	GatingSetList-class
GatingSetList-class	GatingSetList-class
getChannelMarker	getChannelMarker
getChildren	getParent
getChildren,GatingSet,character-method	getParent
getChildren,GatingSet,numeric-method	getParent
getChildren-methods	getParent
getCompensationMatrices	getCompensationMatrices
getCompensationMatrices,GatingHierarchy-method	getCompensationMatrices
getCompensationMatrices-methods	getCompensationMatrices
getData	getData-methods
getData,GatingHierarchy,character-method	getData-methods
getData,GatingHierarchy,missing-method	getData-methods
getData,GatingHierarchy,numeric-method	getData-methods
getData,GatingSet,ANY-method	getData-methods
getData,GatingSet,character-method	getData-methods
getData,GatingSet,missing-method	getData-methods
getData,GatingSet,name-method	getSingleCellExpression
getData,GatingSet,numeric-method	getData-methods
getData,GatingSetList,ANY-method	getData-methods
getData,GatingSetList,name-method	getSingleCellExpression
getFJWSubsetIndices	getFJWSubsetIndices
getGate	getGate
getGate,GatingHierarchy,character-method	getGate
getGate,GatingHierarchy,numeric-method	getGate
getGate,GatingSet,character-method	getGate
getGate,GatingSet,numeric-method	getGate
getGate,GatingSetList,character-method	GatingSetList-class
getGate,GatingSetList,numeric-method	GatingSetList-class
getIndiceMat	getIndiceMat
getIndices	getIndices
getIndices,GatingHierarchy,character-method	getIndices
getIndices,GatingHierarchy,numeric-method	getIndices
getIndices,GatingSet,name-method	getIndices
getIndices-methods	getIndices
getKeywords	getKeywords
getKeywords,flowJoWorkspace,character-method	getKeywords
getKeywords,GatingHierarchy,missing-method	getKeywords
getKeywords,GatingSet,character-method	getKeywords
getKeywords,GatingSet,numeric-method	getKeywords
getKeywords-methods	getKeywords
getLoglevel	loglevel
getNodes	getNodes
getNodes,GatingSet-method	getNodes
getNodes-methods	getNodes
getParent	getParent
getParent,GatingSet,character-method	getParent
getParent,GatingSet,numeric-method	getParent
getParent-methods	getParent
getPopStats	getPopStats
getPopStats,GatingHierarchy-method	getPopStats
getPopStats,GatingSet-method	getPopStats
getPopStats,GatingSetList-method	GatingSetList-class
getPopStats-methods	getPopStats
getProp	getPopStats
getProp,GatingHierarchy,character-method	getPopStats
getProp-methods	getPopStats
getQAStats,GatingSetList-method	GatingSetList-class
getSample	getSample
getSample,GatingHierarchy-method	getSample
getSample-method	getSample
getSampleGroups	getSampleGroups
getSampleGroups,flowJoWorkspace-method	getSampleGroups
getSampleGroups-methods	getSampleGroups
getSamples	getSamples
getSamples,flowJoWorkspace-method	getSamples
getSamples,GatingSet-method	getSamples
getSamples,GatingSetList-method	GatingSetList-class
getSamples-methods	getSamples
getSingleCellExpression	getSingleCellExpression
getSingleCellExpression,GatingSet,character-method	getSingleCellExpression
getSingleCellExpression,GatingSetList,character-method	getSingleCellExpression
getTotal	getPopStats
getTotal,GatingHierarchy,character-method	getPopStats
getTotal-methods	getPopStats
getTransformations	getTransformations
getTransformations,GatingHierarchy-method	getTransformations
getTransformations-methods	getTransformations
isNcdf	isNcdf
keyword	keyword
keyword,GatingHierarchy,character-method	keyword
keyword,GatingHierarchy,missing-method	keyword
keyword,GatingSet,character-method	keyword
keyword,GatingSet,missing-method	keyword
keyword,GatingSetList,character-method	keyword
keyword,GatingSetList,missing-method	keyword
lapply	lapply-methods
lapply,GatingSet-method	lapply-methods
length	length-methods
length,GatingSet-method	length-methods
length-methods	length-methods
load_gs	save_gs
load_gslist	save_gs
mkformula	mkformula
ncFlowSet	ncFlowSet-methods
ncFlowSet,GatingSet-method	ncFlowSet-methods
ncFlowSet<-	ncFlowSet-methods
ncFlowSet<-,GatingSet-method	ncFlowSet-methods
openWorkspace	openWorkspace
openWorkspace,character-method	openWorkspace
openWorkspace-methods	openWorkspace
parseWorkspace	parseWorkspace
parseWorkspace,flowJoWorkspace-method	parseWorkspace
parseWorkspace-methods	parseWorkspace
pData	pData-methods
pData,GatingSet-method	pData-methods
pData<-,GatingSet,data.frame-method	pData-methods
pData<-,GatingSetList,data.frame-method	pData-methods
plot	plot-methods
plot,GatingSet,character-method	plot-methods
plot,GatingSet,missing-method	plot-methods
plot,GatingSet,numeric-method	plot-methods
plotGate	plotGate-methods
plotGate,GatingHierarchy,character-method	plotGate-methods
plotGate,GatingHierarchy,missing-method	plotGate-methods
plotGate,GatingHierarchy,numeric-method	plotGate-methods
plotGate,GatingSet,character-method	plotGate-methods
plotGate,GatingSet,missing-method	plotGate-methods
plotGate,GatingSet,numeric-method	plotGate-methods
plotGate,GatingSetList,character-method	plotGate-methods
plotGate,GatingSetList,numeric-method	plotGate-methods
plotGate-methods	plotGate-methods
plotPopCV	plotPopCV-methods
plotPopCV,GatingHierarchy-method	plotPopCV-methods
plotPopCV,GatingSet-method	plotPopCV-methods
plotPopCV-methods	plotPopCV-methods
rbind2,GatingSet,GatingSet-method	GatingSet-class
rbind2,GatingSetList,missing-method	GatingSetList-class
recompute	add
recompute,GatingSet-method	add
recompute,GatingSetList-method	add
Rm	add
Rm,character,GatingHierarchy,character-method	add
Rm,character,GatingSet,character-method	add
Rm,character,GatingSetList,character-method	add
sampleNames	sampleNames
sampleNames,GatingSet-method	sampleNames
sampleNames,GatingSetList-method	GatingSetList-class
sampleNames<-,GatingSet-method	sampleNames
save_gs	save_gs
save_gslist	save_gs
setGate	add
setGate,GatingHierarchy,character,filter-method	add
setGate,GatingHierarchy,numeric,filter-method	add
setGate,GatingSet,ANY,filterList-method	add
setGate,GatingSet,ANY,list-method	add
setLoglevel	loglevel
setNode	setNode-methods
setNode,GatingHierarchy,character,character-method	setNode-methods
setNode,GatingHierarchy,character,logical-method	setNode-methods
setNode,GatingHierarchy,numeric,character-method	setNode-methods
setNode,GatingHierarchy,numeric,logical-method	setNode-methods
setNode,GatingSet,character,ANY-method	setNode-methods
setNode,GatingSet,numeric,ANY-method	setNode-methods
show	booleanFilter-class
show,booleanFilter-method	booleanFilter-class
show,flowJoWorkspace-method	flowJoWorkspace-class
show,GatingHierarchy-method	GatingHierarchy-class
show,GatingSet-method	GatingSet-class
show,GatingSetList-method	GatingSetList-class
summary	flowJoWorkspace-class
summary,flowJoWorkspace-method	flowJoWorkspace-class
unarchive	archive
[	GatingSet-class
[,GatingSet,ANY-method	GatingSet-class
[,GatingSetList,ANY-method	GatingSet-class
[,GatingSetList,character-method	GatingSetList-class
[,GatingSetList,logical-method	GatingSetList-class
[,GatingSetList,numeric-method	GatingSetList-class
[[	GatingSet-class
[[,GatingSet,character-method	GatingSet-class
[[,GatingSet,logical-method	GatingSet-class
[[,GatingSet,numeric-method	GatingSet-class
[[,GatingSetList,character-method	GatingSetList-class
[[,GatingSetList,logical-method	GatingSetList-class
[[,GatingSetList,numeric-method	GatingSetList-class
