Package: easyRNASeq
Version: 2.0.8
Date: 2014-07-15
Type: Package
Title: Count summarization and normalization for RNA-Seq data.
Author: Nicolas Delhomme, Ismael Padioleau, Bastian Schiffthaler
Maintainer: Nicolas Delhomme <delhomme@embl.de>
Description: Calculates the coverage of high-throughput short-reads against
    a genome of reference and summarizes it per feature of interest (e.g. exon,
    gene, transcript). The data can be normalized as 'RPKM' or by the 'DESeq'
    or 'edgeR' package.
Imports: Biobase (>= 2.24.0), BiocGenerics (>= 0.10.0), biomaRt (>=
        2.20.0), Biostrings (>= 2.32.1), DESeq (>= 1.16.0), edgeR (>=
        3.6.6), genomeIntervals (>= 1.20.1), GenomicAlignments (>=
        1.0.2), GenomicRanges (>= 1.16.3), graphics, IRanges (>=
        1.22.9), LSD (>= 2.5), methods, parallel, Rsamtools (>=
        1.16.1), ShortRead (>= 1.22.0), utils
Suggests: BiocStyle (>= 1.2.0), BSgenome (>= 1.32.0),
        BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.3.1000), GenomicFeatures
        (>= 1.16.2), RnaSeqTutorial (>= 0.2.0), RUnit (>= 0.4.26)
Roxygen: list(wrap = FALSE)
License: Artistic-2.0
LazyLoad: yes
biocViews: GeneExpression, RNASeq, Genetics, Preprocessing
Packaged: 2014-07-17 04:29:34 UTC; biocbuild
Built: R 3.1.1; ; 2014-07-17 08:13:48 UTC; windows
