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| dagLogo-package | Visualize significant conserved amino acid sequence pattern in groups based on probability theory |
| buildBackgroundModel | build background model |
| colorsets | retrieve color setting for logo |
| dagBackground-class | Class '"dagBackground"' |
| dagHeatmap | plot heatmap for test results |
| dagLogo | plot sequence logo for test results |
| dagPeptides-class | Class '"dagPeptides"' |
| ecoli.proteome | the subset proteome of Escherichia coli |
| fetchSequence | fetch sequence by id |
| formatSequence | prepare an object of dagPeptides from sequences |
| nameHash | convert group name to a single character |
| prepareProteome | prepare proteome for background building |
| Proteome-class | Class '"Proteome"' |
| proteome.example | the subset proteome of fruit fly |
| seq.example | example object of dagPeptides |
| testDAU | DAU test |
| testDAUresults-class | Class '"testDAUresults"' |