DataSet                 Datasets gcSample contains a sample of gene
                        clusters.
Gff2GeneTable           Gff2GeneTable
buildGOmap              buildGOmap
clusterProfiler-package
                        statistical analysis and visulization of
                        functional profiles for genes and gene clusters
                        The package implements methods to analyze and
                        visualize functional profiles of gene and gene
                        clusters.
compareCluster          Compare gene clusters functional profile Given
                        a list of gene set, this function will compute
                        profiles of each gene cluster.
compareClusterResult-class
                        Class "compareClusterResult" This class
                        represents the comparison result of gene
                        clusters by GO categories at specific level or
                        GO enrichment analysis.
enrichGO                GO Enrichment Analysis of a gene set. Given a
                        vector of genes, this function will return the
                        enrichment GO categories with FDR control.
enrichKEGG              KEGG Enrichment Analysis of a gene set. Given a
                        vector of genes, this function will return the
                        enrichment KEGG categories with FDR control.
getGOLevel              get GOIDs at a specific level
groupGO                 Functional Profile of a gene set at specific GO
                        level. Given a vector of genes, this function
                        will return the GO profile at specific level.
groupGOResult-class     Class "groupGOResult" This class represents the
                        result of functional Profiles of a set of gene
                        at specific GO level.
plot                    plot method
plotting.clusterProfile
                        plotting-clusterProfile
show                    show method
summary                 summary method
viewKEGG                viewKEGG function is for visualize KEGG
                        pathways works with enrichResult object to
                        visualize enriched KEGG pathway
