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| chipenrich | Run ChIP-Enrich on a dataset of ChIP-seq peaks |
| plot_dist_to_tss | Plot histogram of distance from peak to nearest TSS |
| plot_expected_peaks | Plot the expected number of peaks given locus length for each gene. |
| plot_spline_length | Plot probability of peak being assigned to a gene vs. gene length |
| supported_genesets | List supported genesets |
| supported_genomes | List supported genomes |
| supported_locusdefs | List supported locus definitions |
| supported_methods | List supported methods (enrichment tests) |
| supported_read_lengths | List supported read lengths |