birta-package	birta-package
birta	birta.run
birta,ExpressionSet,ExpressionSet,ExpressionSet-method	birta-methods
birta,ExpressionSet,ExpressionSet,missing-method	birta-methods
birta,ExpressionSet,missing,ExpressionSet-method	birta-methods
birta,ExpressionSet,missing,missing-method	birta-methods
birta,matrix,matrix,matrix-method	birta-methods
birta,matrix,matrix,missing-method	birta-methods
birta,matrix,missing,matrix-method	birta-methods
birta,matrix,missing,missing-method	birta-methods
birta-methods	birta-methods
EColiNetwork	EColiNetwork
EColiOxygen	EColiOxygen
genesets	genesets
get_potential_swaps	get_potential_swaps
limmaAnalysis	limmaAnalysis
limmaAnalysis,ExpressionSet,matrix,character-method	limmaAnalysis-methods
limmaAnalysis,matrix,matrix,character-method	limmaAnalysis-methods
limmaAnalysis-methods	limmaAnalysis-methods
plotConvergence	plotConvergence
potential_swaps	potential_swaps
sim	sim
TFexpr	TFexpr
