Package for high-throughput data processing, outlier detection, noise removal and dynamic modeling

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Documentation for package ‘biosvd’ version 1.0.0

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biosvd-package Package for high-throughput data processing, outlier detection, noise removal and dynamic modeling
apply The Eigensystem class
assaycorrelations The Eigensystem class
assayMatrix The Eigensystem class
biosvd Package for high-throughput data processing, outlier detection, noise removal and dynamic modeling
colorIdFeatures The Eigensystem class
compute Compute the eigensystem for a feature by assay matrix
compute-method Compute the eigensystem for a feature by assay matrix
eigenassays The Eigensystem class
eigenexpressions The Eigensystem class
eigenfeatures The Eigensystem class
Eigensystem The Eigensystem class
Eigensystem-class The Eigensystem class
entropy The Eigensystem class
exclude Excludes specified eigenfeatures/eigenassays from the data
exclude-method Excludes specified eigenfeatures/eigenassays from the data
excludeEigenfeatures The Eigensystem class
featurecorrelations The Eigensystem class
featureMatrix The Eigensystem class
fractions The Eigensystem class
HeLaData Human HeLa Cell Cycle Expression
matrix The Eigensystem class
plot Generate visualizations of the eigensystem
plot-method Generate visualizations of the eigensystem
report Generates a summarizing report of the eigensystem
report-method Generates a summarizing report of the eigensystem
show-method The Eigensystem class
signMatrix The Eigensystem class
sort Sorts the data according to two eigenfeatures and eigenassays
sort-method Sorts the data according to two eigenfeatures and eigenassays
StarvationData Human HeLa Cell Cycle Expression
YeastData Yeast Cell Cycle Expression