SomaticSignatures-package	SomaticSignatures-package
dfConvertColumns	utils
extractSignatures	mutational-signatures
findSignatures	mutational-signatures
gcContent	gc
grangesPlain	granges-utils
hs-chrs	hs-chrs
hsAllosomes	hs-chrs
hsAutosomes	hs-chrs
hsLinear	hs-chrs
hsToplevel	hs-chrs
k3we	kmers-data
k3wg	kmers-data
kmeansSignatures	mutational-signatures
kmerFrequency	kmers
kmers	kmers-data
kmers-data	kmers-data
mutational-normalization	mutational-normalization
mutational-plots	mutational-plots
mutational-signatures	mutational-signatures
mutationContext	mutation-context
mutationContextH5vc	mutation-context
mutationContextMatrix	mutational-signatures
mutationContextMutect	mutation-context
mutationDistance	mutation-distribution
ncbi	granges-utils
nmfSignatures	mutational-signatures
normalizeMotifs	mutational-normalization
pcaSignatures	mutational-signatures
plotRainfall	mutation-distribution
plotSampleMap	mutational-signatures
plotSamples	mutational-signatures
plotSamplesObserved	mutational-signatures
plotSignatureMap	mutational-signatures
plotSignatures	mutational-signatures
plotVariantAbundance	mutational-plots
readMutect	mutect
seqchar	granges-utils
SomaticSignatures	SomaticSignatures-package
ucsc	granges-utils
variants-utils	utils
