Package: SomaticSignatures
Type: Package
Title: Somatic Signatures
Version: 1.0.1
Date: 2014-05-11
Author: Julian Gehring, with contribution of Bernd Fischer (EMBL Heidelberg)
Maintainer: Julian Gehring <julian.gehring@embl.de>
Description: The SomaticSignatures package identifies mutational signatures of single nucleotide variants (SNVs).
URL:
        http://bioconductor.org/packages/release/bioc/html/SomaticSignatures.html,
        https://github.com/julian-gehring/SomaticSignatures
Imports: GenomeInfoDb, GenomicRanges, IRanges, VariantAnnotation,
        Biostrings, ggplot2, ggbio, stringr, reshape2, NMF, methods,
        pcaMethods, gtools
Depends: R (>= 3.0.2)
Suggests: testthat, knitr, BiocStyle, parallel,
        BSgenome.Hsapiens.UCSC.hg19, SomaticCancerAlterations, h5vc,
        h5vcData, fastICA
VignetteBuilder: knitr
ByteCompile: TRUE
License: GPL-3
LazyLoad: yes
biocViews: Sequencing, SomaticMutation, Visualization, Clustering,
        HighThroughputSequencingData, Cancer, PrinicpalComponent,
        GenomicVariation, StatisticalMethod
Packaged: 2014-05-13 11:26:00 UTC; biocbuild
Built: R 3.1.0; ; 2014-05-13 17:32:24 UTC; windows
