Package: Rariant
Type: Package
Title: Identification and Assessment of Single Nucleotide Variants
        through Shifts in Non-Consensus Base Call Frequencies
Version: 1.0.0
Date: 2014-04-09
Author: Julian Gehring, Simon Anders, Bernd Klaus (EMBL Heidelberg)
Maintainer: Julian Gehring <julian.gehring@embl.de>
Imports: IRanges, ggbio, ggplot2, VariantAnnotation, h5vc, exomeCopy,
        SomaticSignatures, Rsamtools, shiny, GenomicRanges
Depends: R (>= 3.0.2)
Suggests: h5vcData, testthat, knitr, BiocStyle, biovizBase, optparse
Description: The 'Rariant' package identifies single nucleotide variants from sequencing data based on the difference of binomially distributed mismatch rates between matched samples.
VignetteBuilder: knitr
Encoding: UTF-8
ByteCompile: TRUE
License: GPL-3
LazyLoad: yes
biocViews: Sequencing, StatisticalMethod, GenomicVariation,
        SomaticMutation, VariantDetection, Visualization
Packaged: 2014-04-12 10:48:00 UTC; biocbuild
Built: R 3.1.0; ; 2014-04-12 16:14:05 UTC; windows
