Package: QuasR
Type: Package
Title: Quantify and Annotate Short Reads in R
Version: 1.4.2
Date: 2014-05-07
Author: Anita Lerch, Dimos Gaiditzis and Michael Stadler
Maintainer: Michael Stadler <michael.stadler@fmi.ch>
Depends: parallel, GenomicRanges (>= 1.13.3), Rbowtie
Imports: methods, zlibbioc, BiocGenerics, IRanges, BiocInstaller,
        Biobase, Biostrings, GenomicRanges, BSgenome, Rsamtools (>=
        1.13.1), GenomicFeatures, ShortRead (>= 1.19.1),
        GenomicAlignments
Suggests: Rsamtools, rtracklayer, Gviz, RUnit, BiocStyle
LinkingTo: Rsamtools
Description: This package provides a framework for the quantification
        and analysis of Short Reads. It covers a complete workflow
        starting from raw sequence reads, over creation of alignments
        and quality control plots, to the quantification of genomic
        regions of interest.
License: GPL-2
biocViews: Genetics, Preprocessing, Sequencing, ChIPSeq, RNASeq,
        MethylSeq
Packaged: 2014-05-08 11:15:37 UTC; biocbuild
Built: R 3.1.0; i386-w64-mingw32; 2014-05-08 16:49:17 UTC; windows
Archs: i386, x64
