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| boxplotResidualBatch | Method "boxplotResidualBatch" |
| boxplotSexGenotype | Method "boxplotSexGenotype" |
| boxplotSexGenotypeBatch | Method "boxplotSexGenotypeBatch" |
| categoricalBarplot | Method "categoricalBarplot" |
| checkDataset | Method "checkDataset" |
| classificationTag | Method "classificationTag" |
| finalModel | Method "finalModel" |
| FisherExactTest | Method "FisherExactTest" |
| generateGraphs | Method "generateGraphs" |
| modelFormula | Method "modelFormula" |
| parserOutputSummary | Method "parserOutputSummary" |
| PhenList | Method "PhenList" |
| PhenList-class | Class "PhenList" |
| PhenTestResult | Method "PhenTestResult" |
| PhenTestResult-class | Class "PhenTestResult" |
| plotResidualPredicted | Method "plotResidualPredicted" |
| qqplotGenotype | Method "qqplotGenotype" |
| qqplotRandomEffects | Method "qqplotRandomEffects" |
| qqplotRotatedResiduals | Method "qqplotRotatedResiduals" |
| scatterplotGenotypeWeight | Method "scatterplotGenotypeWeight" |
| startModel | Method "startModel" |
| summaryOutput | Method "summaryOutput" |
| testDataset | Method "testDataset" |
| testFinalModel | Method "testFinalModel" |
| vectorOutput | Method "vectorOutput" |
| vectorOutputMatrices | Method "vectorOutputMatrices" |