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| BamFileViews | Views into a set of BAM files |
| BamFileViews-class | Views into a set of BAM files |
| BamFileViews-method | Views into a set of BAM files |
| BigWigFileViews | Views into a set of BigWig files |
| BigWigFileViews-class | Views into a set of BigWig files |
| BigWigFileViews-method | Views into a set of BigWig files |
| class:GenomicFileViews | Views into a set of files |
| countBam-method | Views into a set of BAM files |
| coverage-method | Views into a set of BigWig files |
| dim-method | Views into a set of files |
| dimnames-method | Views into a set of files |
| dimnames<--method | Views into a set of files |
| FaFileViews | Views into a set of Fasta files |
| FaFileViews-class | Views into a set of Fasta files |
| FaFileViews-method | Views into a set of Fasta files |
| fileExperiment | Views into a set of files |
| fileExperiment<- | Views into a set of files |
| fileList | Views into a set of files |
| fileList<- | Views into a set of files |
| fileRange | Views into a set of files |
| fileRange<- | Views into a set of files |
| fileSample | Views into a set of files |
| fileSample<- | Views into a set of files |
| findTypeRegistry | Functions for creating and searching a registry of file types. |
| GenomicFileViews | Views into a set of files |
| GenomicFileViews-class | Views into a set of files |
| makeFileType | Functions for creating and searching a registry of file types. |
| names-method | Views into a set of files |
| names<--method | Views into a set of files |
| reduceBy | Distribute parallel computations across files |
| reduceByFile | Distribute parallel computations across files |
| reduceByFile-method | Distribute parallel computations across files |
| reduceByRange | Distribute parallel computations across files |
| reduceByRange-method | Distribute parallel computations across files |
| registerFileType | Functions for creating and searching a registry of file types. |
| registry-utils | Functions for creating and searching a registry of file types. |
| scanBam-method | Views into a set of BAM files |
| show-method | Views into a set of files |
| summarizeOverlaps-method | Views into a set of BAM files |
| summary-method | Views into a set of BigWig files |
| yieldSize-method | Views into a set of files |
| yieldSize<--method | Views into a set of files |
| [-method | Views into a set of files |