bcb46671f9de67f4c98c54cd2fb7b0a6 *CITATION
49c18e5161de4ce007d37ec65eb75d11 *DESCRIPTION
717818bd9082a722a1777856795426a7 *INDEX
fc2043d43a5f9fa391f1f1aa92b7bafe *Meta/Rd.rds
c052ff70c2d0d21177b85a2ef69bb774 *Meta/hsearch.rds
c65c784ec29e47a27e723cc197f501d9 *Meta/links.rds
b4587347e509e5c7ae92b2d56ca131ef *Meta/nsInfo.rds
da48d4639394481b3a74be642dbe6e7b *Meta/package.rds
07c939303415ef9bfe92d5a0d9ec4083 *Meta/vignette.rds
054a10adc3cb1d9f26a57276c59baf49 *NAMESPACE
b24f0e741b3e25af45bd849a5703ba0b *NEWS.Rd
ebf0fc819595d631b8bf280c4b049940 *R/GenomicAlignments
9701a5994166f69709a458457b301a55 *R/GenomicAlignments.rdb
bebad8df7cadef2d0680863e0b3fb049 *R/GenomicAlignments.rdx
29c46b60cd3cd220a92ced8148e49704 *doc/OverlapEncodings.R
54dca331fcb2f8a23362d782384ccb3f *doc/OverlapEncodings.Rnw
cb50de6c84db05de0eb365156fe634dc *doc/OverlapEncodings.pdf
0bbc479df02c28c919d31b2f6d468cc8 *doc/WorkingWithAlignedNucleotides.R
c6afdfccb32c84b36d152e92315b1a49 *doc/WorkingWithAlignedNucleotides.Rnw
1746d9816b7f665545964f0bc5832e7b *doc/WorkingWithAlignedNucleotides.pdf
6dd86252b0a4f4ccb6243c4a3e6c5bcf *doc/index.html
4b5a6a4bb8c86bd8ba50ef0d8e01f00b *doc/summarizeOverlaps.R
8d228b6eee18b32722fc00ec57ced43c *doc/summarizeOverlaps.Rnw
64905b8cd9c46bc2578c0d12900a9e5d *doc/summarizeOverlaps.pdf
1c380f8159fda8fad5d0d4902ae9ea23 *extdata/sm_treated1.bam
af83f784077fcced98e3603bb7ad7a4e *extdata/sm_untreated1.bam
c21d62c9cb30802674f02cb4c0701f1e *help/AnIndex
29a6187d6ce92b328a3611fbc231216d *help/GenomicAlignments.rdb
47ea723947687d8df78a77a35ab8b629 *help/GenomicAlignments.rdx
dd3f6fd61a0d4afb145cdc0d6ed85ce4 *help/aliases.rds
fafb192a1869df543c8d7b30117b28cd *help/paths.rds
10570bd211e2de12c955f6a57de49c7d *html/00Index.html
444535b9cb76ddff1bab1e1865a3fb14 *html/R.css
485366506e0a2207e8592cfbc6b9bc23 *libs/i386/GenomicAlignments.dll
429210c48d1a1b6e67ae4bee926aa91a *libs/x64/GenomicAlignments.dll
006658c9b51f09d15581526e4c1b8d30 *unitTests/test_GAlignments-class.R
78aab165bbaa6364c5e9916a87204ef4 *unitTests/test_GAlignmentsList-class.R
30e138d55e47b12b492623e48ca508de *unitTests/test_cigar-utils.R
0297704686379bd374bc14d19e6fd61d *unitTests/test_findSpliceOverlaps-methods.R
03c20128d1742334efd9c564122e1e4b *unitTests/test_intra-range-methods.R
5ad82941f22ec4b4d2e675254cbf1eb6 *unitTests/test_readGAlignmentPairsFromBam.R
900fb116c027c45378c21dff7ab22e9b *unitTests/test_readGAlignmentsFromBam.R
81cf589f1b969880dde5ed4c5e6e0d55 *unitTests/test_readGAlignmentsListFromBam.R
526b7ac954749a5c28ed0d42adceaa58 *unitTests/test_summarizeOverlaps-methods.R
