importFrom(graphics,plot,barplot,boxplot)
import(BiocGenerics)
import(Biobase)
importFrom(aroma.light,normalizeQuantileRank)
importMethodsFrom(IRanges,width,lapply,as.list)
importClassesFrom(DESeq,CountDataSet)
importClassesFrom(Rsamtools,BamFileList)
importClassesFrom(ShortRead,FastqFileList)
exportClasses(SeqExpressionSet)
exportMethods(length,width,initialize,barplot,plot,plotQuality,exprs,offst,"offst<-",boxplot,meanVarPlot,biasPlot,plotNtFrequency,withinLaneNormalization,betweenLaneNormalization,biasBoxplot,MDPlot,plotRLE)
export(newSeqExpressionSet,plotQuality)
