Package: DMRcate
Title: Illumina 450K methylation array spatial analysis methods
Version: 1.0.2
Date: 2014-29-08
Author: Tim Peters
Maintainer: Tim Peters <Tim.Peters@csiro.au>
Authors@R: c(person("Tim", "Peters", role = c("cre", "aut"),
                    email = "Tim.Peters@csiro.au"),
	     person("Mike", "Buckley", role = "aut"),
             person("Tim", "Triche, Jr.", role = "ctb"))
Description: De novo identification and extraction of differentially methylated regions (DMRs) in the human genome using Illumina Infinium HumanMethylation450 BeadChip array data. Provides functionality for filtering probes possibly confounded by SNPs and cross-hybridisation. Includes bedGraph generation, GRanges generation and plotting functions.
Depends: R (>= 3.1.0), limma, minfi, DMRcatedata
biocViews: DifferentialMethylation, GeneExpression, Microarray,
        MethylationArray, Genetics, DifferentialExpression,
        GenomeAnnotation, DNAMethylation, OneChannel, TwoChannel,
        MultipleComparison, QualityControl, TimeCourse
Suggests: knitr, RUnit, BiocGenerics,
        IlluminaHumanMethylation450kanno.ilmn12.hg19, GenomicRanges
Imports: methods, graphics
License: file LICENSE
VignetteBuilder: knitr
Packaged: 2014-08-31 05:15:43 UTC; biocbuild
Built: R 3.1.1; ; 2014-08-31 07:51:52 UTC; windows
