An R pipeline for .bed file annotation, comparing GO term enrichment between gene sets and data visualisation

Documentation for package ‘CompGO’ version 1.0.0

annotateBedFromDb	Annotate .bed file to genes
bed.sample	A sample of 25 rows from a .bed file of mm9 regions
doZtrans.single	Z transform a single functional annotation chart from DAVID
getFnAnot_genome	Get the functional annotation chart of a gene list using DAVID
plotPairwise	Generates a scatterplot of two sets of GO terms based on DAVID P-values
plotTwoGODags	Plots a directed acyclic graph of GO terms from two different sources
plotZScores	Performs z transform on two sets of GO terms and plots scatterplot of result
slidingJaccard	Plot two functional annotation charts using a sliding Jaccard coefficient
zTransformDirectory	Z-score transformation of DAVID functional annotation charts in a supplied directory