Package: CompGO
Title: An R pipeline for .bed file annotation, comparing GO term
        enrichment between gene sets and data visualisation
Description: This package contains functions to accomplish several
        tasks. It is able to download full genome databases from UCSC,
        import .bed files easily, annotate these .bed file regions with
        genes (plus distance) from aforementioned database dumps,
        interface with DAVID to create functional annotation and gene
        ontology enrichment charts based on gene lists (such as those
        generated from input .bed files) and finally visualise and
        compare these enrichments using either directed acyclic graphs
        or scatterplots.
Version: 1.0.0
Authors@R: c(person("Sam", "Bassett", role = 'aut',
        email='S.Bassett@victorchang.edu.au'), person("Ash",
        "Waardenberg", role=c('aut', 'cre'),
        email='A.Waardenberg@victorchang.edu.au'))
License: GPL-2
Depends: RDAVIDWebService
Imports: rtracklayer, Rgraphviz, ggplot2, GenomicFeatures,
        TxDb.Mmusculus.UCSC.mm9.knownGene
biocViews: GeneSetEnrichment, MultipleComparison, GO, Visualization
Author: Sam Bassett [aut], Ash Waardenberg [aut, cre]
Maintainer: Ash Waardenberg <A.Waardenberg@victorchang.edu.au>
Packaged: 2014-04-12 10:46:31 UTC; biocbuild
Built: R 3.1.0; ; 2014-04-12 12:38:21 UTC; windows
