Package: ChIPQC
Type: Package
Title: Quality metrics for ChIPseq data
Version: 1.0.9
Date: 2014-05-06
Author: Tom Carroll, Wei Liu, Ines de Santiago, Rory Stark
Maintainer: Tom Carroll <tc.infomatics@gmail.com>, Rory Stark <rory.stark@cruk.cam.ac.uk>
Description: Quality metrics for ChIPseq data
biocViews: Sequencing, ChIPSeq, QualityControl, ReportWriting
License: GPL (>= 3)
LazyLoad: yes
Depends: R (>= 3.0.0), ggplot2, DiffBind
Imports: BiocGenerics (>= 0.8.0), Rsamtools (>= 1.14.2), GenomicRanges
        (>= 1.14.4), chipseq (>= 1.12.0), GenomicAlignments (>=
        0.99.2), gtools, BiocParallel, methods, IRanges, reshape2,
        Nozzle.R1, Biobase,grDevices, stats, utils
Suggests: BiocStyle, TxDb.Hsapiens.UCSC.hg19.knownGene,
        TxDb.Hsapiens.UCSC.hg18.knownGene,
        TxDb.Mmusculus.UCSC.mm10.knownGene,
        TxDb.Mmusculus.UCSC.mm9.knownGene,
        TxDb.Rnorvegicus.UCSC.rn4.ensGene,
        TxDb.Celegans.UCSC.ce6.ensGene,
        TxDb.Dmelanogaster.UCSC.dm3.ensGene
Collate: ChIPQCsample-class.R ChIPQCexperiment-class.R sampleQC.R
        ChIPQC_IF.R plots.r dbaplots.R utilities.R report.r
Packaged: 2014-07-28 04:48:52 UTC; biocbuild
Built: R 3.1.1; ; 2014-07-28 06:30:00 UTC; windows
