Package: CSAR
Type: Package
Title: Statistical tools for the analysis of ChIP-seq data
Version: 1.16.0
Date: 2009-11-09
Author: Jose M Muino
Description: Statistical tools for ChIP-seq data analysis. The package
        includes the statistical method described in Kaufmann et al.
        (2009) PLoS Biology: 7(4):e1000090. Briefly, Taking the average
        DNA fragment size subjected to sequencing into account, the
        software calculates genomic single-nucleotide read-enrichment
        values. After normalization, sample and control are compared
        using a test based on the Poisson distribution. Test statistic
        thresholds to control the false discovery rate are obtained
        through random permutation.
Depends: R (>= 2.15.0), IRanges, GenomicRanges
Maintainer: Jose M Muino <jose.muino@wur.nl>
Suggests: ShortRead, Biostrings
Imports: stats, utils
License: Artistic-2.0
LazyLoad: yes
LazyData: yes
biocViews: ChIPSeq, Transcription, Genetics
Packaged: 2014-04-12 09:09:57 UTC; biocbuild
Built: R 3.1.0; i386-w64-mingw32; 2014-04-12 12:44:32 UTC; windows
Archs: i386, x64
