cafa9f3335b4971f16140916c307709f *DESCRIPTION
b00fccc353aaddfbb68387be62b9ff2d *INDEX
bb087882b665fe8e24160a58aedd00ce *LICENSE
b45b18e777311402b61a4d7be972cfd8 *Meta/Rd.rds
0bcb8e2b373b5f8a44c44b8f9e72e794 *Meta/data.rds
4703b2a5bd44bf2f319695f2f6a685aa *Meta/hsearch.rds
d2e93bbc414965221fa8c478255d5d58 *Meta/links.rds
8be81c420ff0eacad8e3d42a91792e46 *Meta/nsInfo.rds
7e83e2b46ede22b6b6067ec7fd23d47c *Meta/package.rds
c403ac006ea5fff8b36528929af494d8 *Meta/vignette.rds
732cb4030d18037f262767172bae4a89 *NAMESPACE
ebf0fc819595d631b8bf280c4b049940 *R/CNEr
77f5a0afec8ea5304f6b1ae38dacdd8f *R/CNEr.rdb
f867ff2426c4e1cb81776378b5fc86ea *R/CNEr.rdx
4d3e8351772649d328ebe10dc44743b5 *data/CNEDanRer7Hg19.rda
4bccccc3af1a32e7f3dfd3e55d70736c *data/CNEHg19DanRer7.rda
eff1642cbb5c189bb94b7d130c74ca83 *data/axisTrack.rda
121ba183adf4a05c8f1a79a5d0ff622e *data/axtDanRer7Hg19.rda
cf26fca2bc1823909e52063fc3f93b94 *data/axtHg19DanRer7.rda
db35fb5e2e1d0905bc4723424de08fe6 *data/cneBlatedDanRer7Hg19.rda
5775d1d647bac07934fb17f470a938f7 *data/cneHg19DanRer7_45_50.rda
ff81c4112f740b9c1fb0648141fcabee *data/cneHg19DanRer7_48_50.rda
6f8de4bd0d1ad0f70874369b94761283 *data/cneHg19DanRer7_49_50.rda
0304f7ed48c725de1004c0cf40dd6c4d *data/cpgIslands.rda
401af71eabf02ebfc9c0d4b0a43dbaa8 *data/finalCNE.rda
14e6ddec0c6ba53c286771cbceef8211 *data/ideoTrack.rda
f18db11fe1a2be1e9a1530b99e38a16e *data/qSizesDanRer7.rda
3968fcb45b4456a38e4f0684ae9d6ac0 *data/qSizesHg19.rda
6a3b6f5d92ce92e440f8ec554df6687a *data/refGenes.rda
52c4279f3cb6a953375e93ac1f79ab3a *doc/CNEr.R
28369ace1d013465c0f7098da49ae351 *doc/CNEr.Rnw
daa5f4dbcb117e6372c88ae0646bec9d *doc/CNEr.pdf
c09d64538c1b232166602cfdd86cd43d *doc/index.html
3653df061208be57aab114a13d0fcba9 *extdata/cne.sqlite
0fdd3eb7a81a346d2286e6441fc722e6 *extdata/danRer7.hg19.net.axt
1ebd48b23b13d186884d12a8a8ad61eb *extdata/filter_regions.danRer7.bed
f25dd58fed25d072490ad1c0e5383385 *extdata/filter_regions.hg19.bed
4ec79a4902d3d315ddf7bb1ccc39b8ac *extdata/hg19.danRer7.net.axt
d6129e47af885968eec49d8fc41f53bd *help/AnIndex
efaf8e9085185072daf8f9cbd3770434 *help/CNEr.rdb
cee0b95f7a9de0631246d63d960249fc *help/CNEr.rdx
47b97edd8912df75c14d827b47f7e911 *help/aliases.rds
e9c2a4ffe2ef403d3bc707688b6c3f3c *help/paths.rds
b96408432e36f3b9e7dddbc5bd28e48b *html/00Index.html
444535b9cb76ddff1bab1e1865a3fb14 *html/R.css
2b8573ef77f157020a33dfcadf2bc5db *libs/i386/CNEr.dll
4a596b56e25347241dddfa8f4492414f *libs/x64/CNEr.dll
3b502ef13330de1cd98dc4288a6f43d1 *obsolete/ceScan.r
d14cd8fb9911e5da6a2ba93af6d5974a *obsolete/ceScanR.r
3cb6e61eeea121ca1058d170532c7a49 *obsolete/class.r
cdd26c6f3a003ce2e80db8921c7a7857 *obsolete/src/ceScan.c
b9b504316a8eeb190646972e165f979f *obsolete/src/ceScanBranch1.c
ed4391ac6a30aa3da32d63d7cbf5b17a *obsolete/src/ceScanBranch2.c
0a1fe70559c587a9104001f5203af75d *obsolete/src/compile
e6743f23d7e0582ddd22bf9fc739808b *scripts/pipeline.r
e75e7c0fe1da8707d0b79c12ae0e3015 *scripts/prepareFiles.r
5ff3c3d0b4759496b2725175479985a1 *scripts/usePrecomputed.r
7f39245e994e83547594a163edcbfb12 *unitTests/test_reverseCigar.R
10582b9c3b602570483b6823de3f150f *unitTests/test_subAxt.R
