High-performing routines for the randomization of a bipartite graph (or a binary event matrix) preserving degree distribution (or marginal totals).

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Documentation for package ‘BiRewire’ version 1.6.5

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BiRewire-package The BiRewire package
BiRewire The BiRewire package
birewire.analysis Analysis of Jaccard similarity trends across switching steps.
birewire.analysis.undirected Analysis of the randomness trend across switching steps in a general undirected graph.
birewire.bipartite.from.incidence Converts an incidence matrix into a bipartite graph.
birewire.rewire Efficient rewiring of undirected graphs
birewire.rewire.bipartite Efficient rewiring of bipartite graphs
birewire.rewire.bipartite.and.projections Analysis and rewiring function processing a bipartite graphs and its two projections
birewire.similarity Compute the Jaccard similarity index between two binary matrices with the same number of non-null entries and the sam row- and column-wise sums.
BRCA_binary_matrix TCGA Brest Cancer data