exportPattern("^[[:alpha:]]+")

#querying functions
export(getAllEnsemblGenesForExFactor, getSpeciesSpecificEnsemblGenesForExFactor, getExperimentsByDescription,
        getGenesForExperimentID, getGenesForExperimentURI, getExperimentURIsForGeneId, getExperimentIdsForGeneURI,
        getLabel, getPathwaysFromGenesAndCondition, drawHeatMapForAtlasExperiment, getOntologyMappings,
        getGeneListFromPubmedid, getGenesForPathwayURI, getPathwayForGeneId, getRankedPathwaysForGeneIds, 
        searchForEFOTerms)

#enrichment functions
export(getGeneUriFromName, getExFactorURIFromLabel, searchForEFOTerms, getGeneUriFromEnsemblId, 
        getPathwayUriFromName, doFishersEnrichment, doFishersEnrichmentForGeneNames, doFishersEnrichmentForEnsemblIds,
        vizPvalues, excludeSubclasses, includeOnlySubclasses, getTaxonURI, orderEnrichmentResults)

exportClasses(generef, pathwayresult, factorbackground, enrichmentresult)
