Package: AtlasRDF
Type: Package
Title: Gene Expression Atlas query and gene set enrichment package.
Version: 1.0.0
Date: 2014-01-23
Author: James Malone, Simon Jupp, Maryam Soleimani
Maintainer: James Malone <malone@ebi.ac.uk>
Depends: R (>= 2.10), hash, SPARQL, methods
Description: Query the Gene Expression Atlas RDF data at the European Bioinformatics Institute using genes, experimental factors (such as disease, cell type, compound treatments), pathways and proteins. Also contains a function to perform an enrichment of your gene list across Experimental Factor Ontology (EFO) using the Atlas background set. 
Note: use the R SPARQL package available at
        http://cran.r-project.org/web/packages/SPARQL/
License: Apache License 2.0
biocViews: Microarray, DataImport, GeneSetEnrichment, GeneExpression,
        DifferentialExpression, DataRepresentation
Packaged: 2014-04-12 10:38:36 UTC; biocbuild
Built: R 3.1.0; ; 2014-04-12 11:30:35 UTC; windows
