AtlasRDF-package	AtlasRDF-package
AtlasRDF	AtlasRDF-package
calculateCountsForGeneLists	calculateCountsForGeneLists
class:enrichmentresult	enrichmentresult-class
class:factorbackground	factorbackground-class
class:generef	generef-class
class:pathwayresult	pathwayresult-class
doFishersEnrichment	doFishersEnrichment
doFishersEnrichmentForEnsemblIds	doFishersEnrichmentForEnsemblIds
doFishersEnrichmentForGeneNames	doFishersEnrichmentForGeneNames
drawHeatMapForAtlasExperiment	drawHeatMapForAtlasExperiment
enrichmentresult	enrichmentresult-class
enrichmentresult-class	enrichmentresult-class
excludeSubclasses	excludeSubclasses
factorbackground	factorbackground-class
factorbackground-class	factorbackground-class
generef	generef-class
generef-class	generef-class
getAllEnsemblGenesForExFactor	getAllEnsemblGenesForExFactor
getExFactorURIFromLabel	getExFactorURIFromLabel
getExperimentIdsForGeneURI	getExperimentIdsForGeneURI
getExperimentsByDescription	getExperimentsByDescription
getExperimentURIsForGeneId	getExperimentURIsForGeneId
getGeneListFromPubmedid	getGeneListFromPubmedid
getGenesForExperimentID	getGenesForExperimentID
getGenesForExperimentURI	getGenesForExperimentURI
getGenesForPathwayURI	getGenesForPathwayURI
getGeneUriFromEnsemblId	getGeneUriFromEnsemblId
getGeneUriFromName	getGeneUriFromName
getLabel	getLabel
getOntologyMappings	getOntologyMappings
getPathwayForGeneId	getPathwayForGeneId
getPathwaysFromGenesAndCondition	getPathwaysFromGenesAndCondition
getPathwayUriFromName	getPathwayUriFromName
getRankedPathwaysForGeneIds	getRankedPathwaysForGeneIds
getSpeciesSpecificEnsemblGenesForExFactor	getSpeciesSpecificEnsemblGenesForExFactor
getTaxonURI	getTaxonURI
includeOnlySubclasses	includeOnlySubclasses
orderEnrichmentResults	orderEnrichmentResults
pathwayresult	pathwayresult-class
pathwayresult-class	pathwayresult-class
searchForEFOTerms	searchForEFOTerms
transcription_pathway_enrichment	transcription_pathway_enrichment
vizPvalues	vizPvalues
