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| AllelicImbalance-package | A package meant to provide all basic functions for high-throughput allele specific expression analysis |
| alleleCounts | ASEset objects |
| alleleCounts-method | ASEset objects |
| AllelicImbalance | A package meant to provide all basic functions for high-throughput allele specific expression analysis |
| ASEset | ASEset objects |
| ASEset-barplot | barplot ASEset objects |
| ASEset-class | ASEset objects |
| ASEset-locationplot | locationplot ASEset objects |
| ASEsetFromCountList | Initialize ASEset |
| barplot | barplot ASEset objects |
| barplot-method | barplot ASEset objects |
| binom.test-method | binomial test |
| chisq.test-method | chi-square test |
| fraction | ASEset objects |
| fraction-method | ASEset objects |
| getAlleleCounts | snp count data |
| getAlleleCounts2 | snp count data |
| getAnnotationDataFrame | AnnotationDb wrappers |
| getAreaFromGeneNames | Get Gene Area |
| getCDSFromAnnotation | AnnotationDb wrappers |
| getCDSVector | AnnotationDb wrappers |
| getDefaultMapBiasExpMean | Map Bias |
| getDefaultMapBiasExpMean3D | Map Bias |
| getExonsFromAnnotation | AnnotationDb wrappers |
| getExonsVector | AnnotationDb wrappers |
| getGenesFromAnnotation | AnnotationDb wrappers |
| getGenesVector | AnnotationDb wrappers |
| getSnpIdFromLocation | Get rsIDs from locations of SNP |
| getTranscriptsFromAnnotation | AnnotationDb wrappers |
| getTranscriptsVector | AnnotationDb wrappers |
| GRvariants | GRvariants object |
| impBamGAL | Import Bam |
| impBamGRL | Import Bam |
| impBcfGR | Import Bcf Selection |
| impBcfGRL | Import Bcf Selection |
| initialize-ASEset | Initialize ASEset |
| locationplot | locationplot ASEset objects |
| locationplot-method | locationplot ASEset objects |
| mapBias | ASEset objects |
| mapBias-method | ASEset objects |
| reads | reads object |
| scanForHeterozygotes | scanForHeterozygotes |