Example ChIP-Seq data for the MMDiff package

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Documentation for package ‘MMDiffBamSubset’ version 0.99.4

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MMDiffBamSubset-package Utilities returning the paths to the sample sheet Cfp1.csv, to the BAM files WT_2.bam, Null_2.bam, Resc_2.bam and Input.bam, as well as corresponding peak files WT_2_Macs_peaks.xls, Null_2_Macs_peaks.xls Resc_2_Macs_peaks.xls
Cfp1.Exp Utilities returning the paths to the sample sheet Cfp1.csv, to the BAM files WT_2.bam, Null_2.bam, Resc_2.bam and Input.bam, as well as corresponding peak files WT_2_Macs_peaks.xls, Null_2_Macs_peaks.xls Resc_2_Macs_peaks.xls
Input Utilities returning the paths to the sample sheet Cfp1.csv, to the BAM files WT_2.bam, Null_2.bam, Resc_2.bam and Input.bam, as well as corresponding peak files WT_2_Macs_peaks.xls, Null_2_Macs_peaks.xls Resc_2_Macs_peaks.xls
MMDiffBamSubset Utilities returning the paths to the sample sheet Cfp1.csv, to the BAM files WT_2.bam, Null_2.bam, Resc_2.bam and Input.bam, as well as corresponding peak files WT_2_Macs_peaks.xls, Null_2_Macs_peaks.xls Resc_2_Macs_peaks.xls
Null.AB2 Utilities returning the paths to the sample sheet Cfp1.csv, to the BAM files WT_2.bam, Null_2.bam, Resc_2.bam and Input.bam, as well as corresponding peak files WT_2_Macs_peaks.xls, Null_2_Macs_peaks.xls Resc_2_Macs_peaks.xls
Null.AB2.Peaks Utilities returning the paths to the sample sheet Cfp1.csv, to the BAM files WT_2.bam, Null_2.bam, Resc_2.bam and Input.bam, as well as corresponding peak files WT_2_Macs_peaks.xls, Null_2_Macs_peaks.xls Resc_2_Macs_peaks.xls
Resc.AB2 Utilities returning the paths to the sample sheet Cfp1.csv, to the BAM files WT_2.bam, Null_2.bam, Resc_2.bam and Input.bam, as well as corresponding peak files WT_2_Macs_peaks.xls, Null_2_Macs_peaks.xls Resc_2_Macs_peaks.xls
Resc.AB2.Peaks Utilities returning the paths to the sample sheet Cfp1.csv, to the BAM files WT_2.bam, Null_2.bam, Resc_2.bam and Input.bam, as well as corresponding peak files WT_2_Macs_peaks.xls, Null_2_Macs_peaks.xls Resc_2_Macs_peaks.xls
WT.AB2 Utilities returning the paths to the sample sheet Cfp1.csv, to the BAM files WT_2.bam, Null_2.bam, Resc_2.bam and Input.bam, as well as corresponding peak files WT_2_Macs_peaks.xls, Null_2_Macs_peaks.xls Resc_2_Macs_peaks.xls
WT.AB2.Peaks Utilities returning the paths to the sample sheet Cfp1.csv, to the BAM files WT_2.bam, Null_2.bam, Resc_2.bam and Input.bam, as well as corresponding peak files WT_2_Macs_peaks.xls, Null_2_Macs_peaks.xls Resc_2_Macs_peaks.xls