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| CS | COUPLING SET |
| DE_Input | control data set from definitive endoderm |
| DE_MeDIP | Concatenated set of three MeDIP-seq data sets (replicates) from definitive endoderm |
| hESCs_Input | control data set from human embryonic stem cells |
| hESCs_MeDIP | Concatenated set of three MeDIP-seq data sets (replicates) from human embryonic stem cells |
| mart_gene | An annotation object generated by accessing biomaRt using the MEDIPS.getAnnotation function of the MEDIPS package. |
| resultTable | A result table as returnced by the MEDIPS.meth function of the MEDIPS package |