AMC_CRC_clinical        Data used in the package DeSousa2013
CRCPipeLine             Pipeline function for De Sousa 2013
buildClassifier         Build a gene expression based classifier
compGapStats            Computing Gap statistics to identify the
                        optimal number of subtypes
conClust                Consensus clustering
filterDiffGenes         Select the most predictive genes from
                        differential genes
filterSamples           Filter colon cancer samples by Silhouette width
findDiffGenes           Search for differential genes between subtypes
geneExpPre              Preprocessing of the AMC-AJCCII-90 microarray
                        data
getCentroids            Retrieve centroids of a PAM classifier
pamClassify             Classifying the AMC samples
pbs2unigenes            Generate a mapping file between probesets and
                        unique gene symbols
progAMC                 Prognosis of the three subtypes in the AMC data
                        set
selTopVarGenes          Select top variable probesets
