wateRmelon-package	wateRmelon-package
adaptRefQuantiles	adaptRefQuantiles
as.methylumi	as.methylumi-methods
as.methylumi,ANY-method	as.methylumi-methods
as.methylumi,MethylSet-method	as.methylumi-methods
as.methylumi,MethyLumiSet-method	as.methylumi-methods
as.methylumi-methods	as.methylumi-methods
beadc	beadc
beadcount	beadcount
Beta2M	Beta2M
betaqn	dasen
betaqn,exprmethy450-method	dasen-exprmethy450
betaqn,MethylSet-method	dasen-MethySet
betaqn,MethyLumiSet-method	dasen-MethyLumiSet
betaqn,RGChannelSet-method	dasen-MethySet
bgIntensitySwan.methylumi	adaptRefQuantiles
BMIQ	BMIQ
BMIQ,ANY-method	BMIQ
BMIQ,MethyLumiSet-method	BMIQ
BMIQ-methods	BMIQ
CheckBMIQ	BMIQ
colnames,MethyLumiSet-method	colnames-methods
colnames-methods	colnames-methods
combo	combo
concatenateMatrices	adaptRefQuantiles
coRankedMatrices	adaptRefQuantiles
correctI	Beta2M
correctII	Beta2M
danen	dasen
danen,MethylSet-method	dasen-MethySet
danen,MethyLumiSet-method	dasen-MethyLumiSet
danen,RGChannelSet-method	dasen-MethySet
danes	dasen
danes,MethylSet-method	dasen-MethySet
danes,MethyLumiSet-method	dasen-MethyLumiSet
danes,RGChannelSet-method	dasen-MethySet
danet	dasen
danet,MethylSet-method	dasen-MethySet
danet,MethyLumiSet-method	dasen-MethyLumiSet
danet,RGChannelSet-method	dasen-MethySet
dasen	dasen
dasen,MethylSet-method	dasen-MethySet
dasen,MethyLumiSet-method	dasen-MethyLumiSet
dasen,RGChannelSet-method	dasen-MethySet
dataDetectPval2NA	adaptRefQuantiles
daten1	dasen
daten1,MethylSet-method	dasen-MethySet
daten1,MethyLumiSet-method	dasen-MethyLumiSet
daten1,RGChannelSet-method	dasen-MethySet
daten2	dasen
daten2,MethylSet-method	dasen-MethySet
daten2,MethyLumiSet-method	dasen-MethyLumiSet
daten2,RGChannelSet-method	dasen-MethySet
db1	db1
detectionPval.filter	adaptRefQuantiles
dfs2	db1
dfsfit	db1
dmrse	dmrse
dmrse,exprmethy450-method	dmrse-methods
dmrse,MethylSet-method	dmrse-methods
dmrse,MethyLumiSet-method	dmrse-methods
dmrse,RGChannelSet-method	dmrse-methods
dmrse-methods	dmrse-methods
dmrse_col	dmrse
dmrse_col,exprmethy450-method	dmrse-methods
dmrse_col,MethylSet-method	dmrse-methods
dmrse_col,MethyLumiSet-method	dmrse-methods
dmrse_col,RGChannelSet-method	dmrse-methods
dmrse_col-methods	dmrse-methods
dmrse_row	dmrse
dmrse_row,exprmethy450-method	dmrse-methods
dmrse_row,MethylSet-method	dmrse-methods
dmrse_row,MethyLumiSet-method	dmrse-methods
dmrse_row,RGChannelSet-method	dmrse-methods
dmrse_row-methods	dmrse-methods
filterXY	adaptRefQuantiles
findAnnotationProbes	adaptRefQuantiles
fot	got
fuks	dasen
fuks,exprmethy450-method	dasen-exprmethy450
fuks,MethylSet-method	dasen-MethySet
fuks,MethyLumiSet-method	dasen-MethyLumiSet
fuks,RGChannelSet-method	dasen-MethySet
gcoms	genkme
gcose	genkme
genki	genki
genki,exprmethy450-method	genki-methods
genki,MethylSet-method	genki-methods
genki,MethyLumiSet-method	genki-methods
genki,RGChannelSet-method	genki-methods
genki-methods	genki-methods
genkme	genkme
genkus	genkme
getColumns	as.methylumi-methods
getMethylumiBeta	adaptRefQuantiles
getQuantiles	adaptRefQuantiles
getSamples	adaptRefQuantiles
getsnp	genkme
got	got
iDMR	iDMR
loadMethylumi2	adaptRefQuantiles
lumiMethyR2	adaptRefQuantiles
M2Beta	Beta2M
melon	melon
metrics	metrics
nanes	dasen
nanes,MethylSet-method	dasen-MethySet
nanes,MethyLumiSet-method	dasen-MethyLumiSet
nanes,RGChannelSet-method	dasen-MethySet
nanet	dasen
nanet,MethylSet-method	dasen-MethySet
nanet,MethyLumiSet-method	dasen-MethyLumiSet
nanet,RGChannelSet-method	dasen-MethySet
nasen	dasen
nasen,MethylSet-method	dasen-MethySet
nasen,MethyLumiSet-method	dasen-MethyLumiSet
nasen,RGChannelSet-method	dasen-MethySet
naten	dasen
naten,MethylSet-method	dasen-MethySet
naten,MethyLumiSet-method	dasen-MethyLumiSet
naten,RGChannelSet-method	dasen-MethySet
nbBeadsFilter	adaptRefQuantiles
normalize.quantiles2	adaptRefQuantiles
normalizeIlluminaMethylation	adaptRefQuantiles
pfilter	pfilter
pfilter,MethyLumiSet-method	pfilter
pfilter,RGChannelSetExtended-method	pfilter
pfilter-methods	pfilter
pipelineIlluminaMethylation.batch	adaptRefQuantiles
pop	got
preprocessIlluminaMethylation	adaptRefQuantiles
referenceQuantiles	adaptRefQuantiles
robustQuantileNorm_Illumina450K	adaptRefQuantiles
robustQuantileNorm_Illumina450K.probeCategories	adaptRefQuantiles
seabi	seabi
seabi,exprmethy450-method	seabi-methods
seabi,MethylSet-method	seabi-methods
seabi,MethyLumiSet-method	seabi-methods
seabi,RGChannelSet-method	seabi-methods
seabi-methods	seabi-methods
seabird	seabird
sextest	sextest
summits	Beta2M
swan	dasen
swan,MethylSet-method	dasen-MethySet
swan,MethyLumiSet-method	dasen-MethyLumiSet
swan,RGChannelSet-method	dasen-MethySet
tost	dasen
tost,MethylSet-method	dasen-MethySet
tost,MethyLumiSet-method	dasen-MethyLumiSet
tost,RGChannelSet-method	dasen-MethySet
uniqueAnnotationCategory	adaptRefQuantiles
wateRmelon	wateRmelon-package
