ISG.geneSet             Example gene set containing IFN stimulated
                        genes
MSIG.geneSets           MSigDB's Canonical Pathways gene set database.
QSarray-class           Class '"QSarray"'
aggregateGeneSet        Calculate Pathway Activation
calcBayesCI             Calculate pathway Confidence Intervals
calcVIF                 Calculate Variance Inflation Factor
fluExample              Example gene expression set
getXcoords              Get the X coordinates for the points of the PDF
makeComparison          Compare Genes Between Two Groups
newQSarray              The qusage Array Object
pdf.pVal                Calculate p-values for gene set activity
plotCIs                 Plot Pathway Mean and Confidence Intervals
plotCIsGenes            Plot Gene Mean and Confidence Intervals
plotDensityCurves       Plot gene set PDFs
plotGeneSetDistributions
                        Plot gene and gene set PDFs
qsTable                 Summary of QSarray Results
qusage                  Run qusage on an expression dataset
read.gmt                Read in gene set information from .gmt files
