Package: prebs
Title: Probe region expression estimation for RNA-seq data for improved
        microarray comparability
Description: The prebs package aims at making RNA-sequencing (RNA-seq)
    data more comparable to microarray data. The comparability is achieved
    by summarizing sequencing-based expressions of probe regions using
    a modified version of RMA algorithm. The pipeline takes mapped reads
    in BAM format as an input and produces either gene expressions or
    original microarray probe set expressions as an output.
Version: 1.2.1
Author: Karolis Uziela and Antti Honkela
Maintainer: Karolis Uziela <karolis.uziela@scilifelab.se>
Depends: R (>= 2.14.0), Rsamtools (>= 1.13.1), affy
Imports: parallel, methods, stats, GenomicRanges (>= 1.13.3), IRanges
Suggests: prebsdata, hgu133plus2cdf, hgu133plus2probe
License: Artistic-2.0
biocViews: Microarray, RNAseq, Sequencing, Bioinformatics,
        GeneExpression, Preprocessing
Collate: 'PREBS.R'
Packaged: 2014-03-21 08:33:22 UTC; biocbuild
Built: R 3.0.3; ; 2014-03-21 12:52:46 UTC; windows
