Package: phyloseq
Version: 1.6.1
Date: 2014-02-08
Title: Handling and analysis of high-throughput microbiome census data.
Description: phyloseq provides a set of classes and tools
    to facilitate the import, storage, analysis, and
    graphical display of microbiome census data.
Maintainer: Paul J. McMurdie <mcmurdie@stanford.edu>
Author: Paul J. McMurdie <mcmurdie@stanford.edu>, Susan
    Holmes <susan@stat.stanford.edu>, with contributions
    from Gregory Jordan and Scott Chamberlain
License: AGPL-3
Imports: ape (>= 3.0.8), biom (>= 0.3.9), Biostrings (>= 2.28.0),
        cluster (>= 1.14.4), foreach (>= 1.4), ggplot2 (>= 0.9.3.1),
        igraph (>= 0.6.5.2), multtest (>= 2.16.0), plyr (>= 1.8),
        reshape2 (>= 1.2.2), scales (>= 0.2.3), vegan (>= 2.0.7)
Depends: R (>= 3.0.0), methods, ade4 (>= 1.5.2), picante (>= 1.5.2)
Suggests: genefilter (>= 1.42.0), testthat (>= 0.7.1)
Enhances: doParallel (>= 1.0.1)
biocViews: Clustering, Classification, MultipleComparisons,
        QualityControl, GeneticVariability, HighThroughputSequencing
URL: http://dx.plos.org/10.1371/journal.pone.0061217
BugReports: https://github.com/joey711/phyloseq/issues
Collate: 'allClasses.R' 'allPackage.R' 'allData.R' 'as-methods.R'
        'show-methods.R' 'plot-methods.R' 'extract-methods.R'
        'almostAllAccessors.R' 'otuTable-class.R' 'phyloseq-class.R'
        'taxonomyTable-class.R' 'IO-methods.R' 'merge-methods.R'
        'multtest-wrapper.R' 'ordination-methods.R'
        'transform_filter-methods.R' 'validity-methods.R'
        'assignment-methods.R' 'sampleData-class.R' 'extend_vegan.R'
        'network-methods.R' 'distance-methods.R'
        'deprecated_functions.R'
Packaged: 2014-02-10 09:21:13 UTC; biocbuild
Built: R 3.0.2; ; 2014-02-10 16:23:36 UTC; windows
