count.stats             Summary of statistics of spectral counts by
                        sample in the dataset
counts.hc               Hierarchical clustering on an spectral counts
                        matrix.
counts.heatmap          Heatmap of an spectral counts matrix.
counts.pca              Principal components analysis of an spectral
                        counts matrix.
disp.estimates          Residual dispersion estimates
gene.table              Gene symbols associated to protein accessions
msms.dataset            LC-MS/MS dataset
msmsEDA-package         Exploratory Data Analysis of label-free
                        LC-MS/MS spectral counts
norm.counts             Spectral counts matrix normalization
pnms                    Accessions and gene symbols
pp.msms.data            Spectral counts matrix pre-processing
