NBdata                  RNA-Seq dataset example
NBdesign                Experimental design for RNA-Seq example
PlotGroups              Function for plotting gene expression profile
                        at different experimental groups
PlotProfiles            Function for visualization of gene expression
                        profiles
T.fit                   Makes a stepwise regression fit for time series
                        gene expression experiments
average.rows            Average rows by match and index
data.abiotic            Gene expression data potato abiotic stress
edesign.OD              Experimental design with a measured independent
                        variable
edesign.abiotic         Experimental design potato abiotic stress
edesignCT               Experimental design with a shared time
edesignDR               Experimental design with different replicates
get.siggenes            Extract significant genes for sets of variables
                        in time series gene expression experiments
i.rank                  Ranks a vector to index
maSigPro                Wrapping function for identifying significant
                        differential gene expression profiles in
                        micorarray time course experiments
maSigProUsersGuide      View maSigPro User's Guide
make.design.matrix      Make a design matrix for regression fit of time
                        series gene expression experiments
p.vector                Make regression fit for time series gene
                        expression experiments
position                Column position of a variable in a data frame
reg.coeffs              Calculate true variables regression
                        coefficients
see.genes               Wrapper function for visualization of gene
                        expression values of time course experiments
stepback                Fitting a linear model by backward-stepwise
                        regression
stepfor                 Fitting a linear model by forward-stepwise
                        regression
suma2Venn               Creates a Venn Diagram from a matrix of
                        characters
two.ways.stepback       Fitting a linear model by backward-stepwise
                        regression
two.ways.stepfor        Fitting a linear model by forward-stepwise
                        regression
