Managing alignment tallies using a hdf5 backend

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Documentation for package ‘h5vc’ version 1.0.6

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h5vc-package Managing alignment tallies using a hdf5 backend
bases Mutation spectrum analyses
binnedCoverage Coverage analysis
callDeletionsPaired Variant calling
callVariantsPaired Variant calling
encodeDNAString helper functions
formatGenomicPosition helper functions
geom_h5vc geom_h5vc
getSampleData Extracting sample data from a tally file
h5dapply h5dapply
h5vc Managing alignment tallies using a hdf5 backend
mismatchPlot mismatchPlot
mutationSpectrum Mutation spectrum analyses
setSampleData Extracting sample data from a tally file
variantCalls Mutation spectrum analyses
vcConfParams Variant calling