doublingTime            Doubling time for genome projects
efetch                  Entrez database downloads
einfo                   Entrez database information
elink                   Entrez database links
ena                     ENA browser REST URL
enaParse                Parse XML from ENA browser
esearch                 Entrez database search
esummary                Entrez database summaries
euks                    Eukaryotic genomes at NCBI
ftpList                 List FTP files and directories
genomes                 Introduction to the genomes package
genomes-lines           Add lines to a genomes plot
genomes-plot            Genome table plots by release date
genomes-summary         Genome table summaries
genomes-update          Genome table updates
genus                   Extract the genus name
image2                  Display a matrix image
like                    Pattern matching using wildcards
ncbiGenome              NCBI Genome links to the Nucleotide database
ncbiNucleotide          NCBI Nucleotide database
ncbiProject             NCBI BioProject database
ncbiPubmed              NCBI PubMed database
ncbiRelease             NCBI revision history
ncbiSubmit              NCBI submission dates
ncbiTaxonomy            NCBI taxonomy database
plotby                  Plot groups of genomes by release date
print.genomes           Print genome tables
proks                   Prokaryotic genomes at NCBI
read.genemark           Read a GeneMark output file
read.gff                Read a GFF file from NCBI
read.glimmer            Read a Glimmer output file
read.ncbi.ftp           Read files from the NCBI genomes FTP
read.prodigal           Read a Prodigal gene finding output file
read.ptt                Read a NCBI protein or RNA feature table
species                 Extract the species name
table2                  Format and sort a contigency table
virus                   Virus genomes at NCBI
year                    Parse a date string
