CHANNEL.CLMNS           Seaflow detector column names
CHANNEL.CLMNS.SM        Seaflow detector column names
EVT.HEADER              Seaflow File Headers
POP.DEF                 population definition table
REPO.PATH               Seaflow Data directory
census                  Cross tabulate a consensus vector
censusFile              Create a consensus from several classification
                        vector files and cross tabulate the population
                        composition
classify                Cluster the different Phytoplankton Populations
classifyFile            Cluster the different Phytoplankton Populations
cleanupLogs             Remove R Batch Output Files.
clearOutputs            Clear the output files from particular
                        flowPhyto pipeline steps.
cmdArgsToVariables      Create R variables from command line parameters
combineCensusFiles      Combine the Census Files.
combineSdsFiles         Combine the SDS files.
consensus               create a consensus vector from several
                        classification vectors
consensusFile           Create a consensus from several classification
                        vector files and cross tabulate the population
                        composition
createResamplingScheme
                        Generate the Population Resampling scheme.
filter                  Filter Optimally Positioned Particles from an
                        EVT dataframe
filterFile              Filter an EVT file and output an Optimally
                        Positioned Particles (OPP) file
getCruiseFiles          Get all of the files from a cruise.
getCruisePath           Get the Cruise Directory.
getFileNumber           Get the (original) integer file number of any
                        seaflow repository file.
joinSDS                 join this dataframe to the corresponding SDS
                        log file entry.
pipeline                Run the SeaFlow Pipeline
plotCruiseStats         Plot a seaflow cruise statistics
plotCytogram            Plot a Phytoplankton Cytogram
plotLatLongMap          plot file location on a map
plotStatMap             plot the stat.tab file on a map
readConsensusFile       Read a Consensus File.
readPopDef              Read the Population Definition File.
readSeaflow             Read a SeaFlow File
summarize               Summarize phytoplankon event & log parameters
summarizeFile           Compute aggregate statistics on a collection of
                        opp or fcs files.
validatePopDef          Validate a Population Definition Dataframe.
writeSeaflow            Write A SeaFlow File
