Package: easyRNASeq
Version: 1.8.8
Date: 2014-04-03
Type: Package
Title: Count summarization and normalization for RNA-Seq data.
Author: Nicolas Delhomme, Ismael Padioleau, Bastian Schiffthaler
Maintainer: Nicolas Delhomme <delhomme@embl.de>
Description: Calculates the coverage of high-throughput short-reads against
    a genome of reference and summarizes it per feature of interest (e.g. exon,
    gene, transcript). The data can be normalized as 'RPKM' or by the 'DESeq'
    or 'edgeR' package.
Depends: genomeIntervals (>= 1.18.0), Biobase (>= 2.22.0), biomaRt (>=
        2.18.0), edgeR (>= 3.4.0), Biostrings (>= 2.30.0), DESeq (>=
        1.14.0), GenomicRanges (>= 1.14.3), IRanges (>= 1.20.5),
        Rsamtools (>= 1.14.1), ShortRead (>= 1.20.0)
Imports: graphics, methods, parallel, utils, BiocGenerics (>= 0.8.0),
        LSD (>= 2.5)
Suggests: BSgenome (>= 1.30.0), BSgenome.Dmelanogaster.UCSC.dm3 (>=
        1.3.19), GenomicFeatures (>= 1.14.0), RnaSeqTutorial (>=
        0.0.13), BiocStyle (>= 1.0.0)
License: Artistic-2.0
LazyLoad: yes
biocViews: GeneExpression, RNAseq, Genetics, Preprocessing
Packaged: 2014-04-04 08:09:12 UTC; biocbuild
Built: R 3.0.3; ; 2014-04-04 10:37:33 UTC; windows
