Proteome-class          Class '"Proteome"'
buildBackgroundModel    build background model
colorsets               retrieve color setting for logo
dagBackground-class     Class '"dagBackground"'
dagHeatmap              plot heatmap for test results
dagLogo                 plot sequence logo for test results
dagLogo-package         Visualize significant conserved amino acid
                        sequence pattern in groups based on probability
                        theory
dagPeptides-class       Class '"dagPeptides"'
ecoli.proteome          the subset proteome of Escherichia coli
fetchSequence           fetch sequence by id
formatSequence          prepare an object of dagPeptides from sequences
nameHash                convert group name to a single character
prepareProteome         prepare proteome for background building
proteome.example        the subset proteome of fruit fly
seq.example             example object of dagPeptides
testDAU                 DAU test
testDAUresults-class    Class '"testDAUresults"'
