Package: charm
Type: Package
Title: Analysis of DNA methylation data from CHARM microarrays
Version: 2.8.0
Date: 2012-10-17
Author: Martin Aryee, Peter Murakami, Harris Jaffee, Rafael Irizarry
Maintainer: Peter Murakami <pmurakam@jhsph.edu>
Depends: R (>= 2.14.0), Biobase, SQN, fields, RColorBrewer, genefilter
Imports: BSgenome, Biobase, oligo (>= 1.11.31), oligoClasses(>=
        1.17.39), ff, preprocessCore, methods, stats, Biostrings,
        IRanges, siggenes, nor1mix, gtools, grDevices, graphics, utils,
        limma, parallel, sva(>= 3.1.2)
Suggests: charmData, BSgenome.Hsapiens.UCSC.hg18, corpcor
Description: This package implements analysis tools for DNA methylation  data generated using Nimblegen microarrays and the McrBC protocol. It finds differentially methylated regions between samples, calculates percentage methylation estimates and includes array quality assessment tools.
License: LGPL (>= 2)
LazyLoad: yes
biocViews: Microarray, Bioinformatics, DNAMethylation
Packaged: 2013-10-15 07:33:41 UTC; biocbuild
Built: R 3.0.2; ; 2013-10-15 14:57:02 UTC; windows
