R library for Bioactivity analysis

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Documentation for package ‘bioassayR’ version 1.0.0

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activeAgainst Show compounds active against a specified target
activeTargets Show targets against which a small molecule is active
activityMatrix Output a matrix of compound bioactivity
addBioassayIndex Index a bioassayR database
addDataSource Add a new data source to a bioassayR database
aid Class '"bioassay"'
aid-method Class '"bioassay"'
aid<- Class '"bioassay"'
aid<--method Class '"bioassay"'
assay_type Class '"bioassay"'
assay_type-method Class '"bioassay"'
assay_type<- Class '"bioassay"'
assay_type<--method Class '"bioassay"'
bioassay Class '"bioassay"'
bioassay-class Class '"bioassay"'
BioAssaySet-class Class '"BioAssaySet"'
connectBioassayDB Create a 'BioAssaySet' object connected to the specified database file
disconnectBioassayDB Disconnect the database file from a 'BioAssaySet' object
dropBioassay Delete an assay from a bioassayR database
dropBioassayIndex Remove index from a bioassayR database
getAssay Retrieve a bioassay
loadBioassay Add an assay to the database
newBioassayDB Create a new bioassayR database
organism Class '"bioassay"'
organism-method Class '"bioassay"'
organism<- Class '"bioassay"'
organism<--method Class '"bioassay"'
parsePubChemBioassay Parse PubChem Bioassay Data
queryBioassayDB Perform a SQL query on a bioassayR database
queryBioassayDB-method Class '"BioAssaySet"'
samplebioassay Sample activity data for use with bioassayR
scores Class '"bioassay"'
scores-method Class '"bioassay"'
scores<- Class '"bioassay"'
scores<--method Class '"bioassay"'
scoring Class '"bioassay"'
scoring-method Class '"bioassay"'
scoring<- Class '"bioassay"'
scoring<--method Class '"bioassay"'
selectiveAgainst Identify small molecules with selective binding against a target of interest
show Class '"bioassay"'
show-method Class '"BioAssaySet"'
show-method Class '"bioassay"'
source_id Class '"bioassay"'
source_id-method Class '"bioassay"'
source_id<- Class '"bioassay"'
source_id<--method Class '"bioassay"'
targets Class '"bioassay"'
targets-method Class '"bioassay"'
targets<- Class '"bioassay"'
targets<--method Class '"bioassay"'
target_types Class '"bioassay"'
target_types-method Class '"bioassay"'
target_types<- Class '"bioassay"'
target_types<--method Class '"bioassay"'