Package: ampliQueso
Type: Package
Title: Analysis of amplicon enrichment panels
Version: 1.0.0
Date: 2013-08-06
Author: Alicja Szabelska <alicja.szabelska@up.poznan.pl>; Marek Wiewiorka <marek.wiewiorka@gmail.com>; Michal Okoniewski <michal@fgcz.ethz.ch> 
Maintainer: Michal Okoniewski <michal@fgcz.ethz.ch>
Depends: R (>= 2.15.0), rnaSeqMap (>= 2.17.1), knitr, rgl, ggplot2,
        gplots, parallel, doParallel, foreach,
        VariantAnnotation,genefilter,statmod,xtable
Imports: edgeR, DESeq, samr
Suggests:
Description: The package provides tools and reports for the analysis of amplicon sequencing panels, such as AmpliSeq 
License: GPL-2
URL:
biocViews: Bioinformatics, ReportWriting, Transcription,
        GeneExpression, DifferentialExpression,
        HighThroughputSequencing, RNAseq, Visualization
Collate: compareCoverages.R getCountTable.R getSNP.R auxFunctions.R
        compareCoveragesRegions.R runAQReport.R getCamelTests.R
Packaged: 2013-10-15 08:28:49 UTC; biocbuild
Built: R 3.0.2; ; 2013-10-15 14:42:06 UTC; windows
