bg	XMatrixList-class
bg,XMatrix-method	XMatrix-class
bg,XMatrixList-method	XMatrixList-class
bg<-,XMatrix-method	XMatrix-class
deleteMatrixHavingID	deleteMatrixHavingID-methods
deleteMatrixHavingID,character-method	deleteMatrixHavingID-methods
deleteMatrixHavingID,JASPAR2014-method	deleteMatrixHavingID-methods
deleteMatrixHavingID,SQLiteConnection-method	deleteMatrixHavingID-methods
getMatrixByID	getMatrixByID-methods
getMatrixByID,character-method	getMatrixByID-methods
getMatrixByID,JASPAR2014-method	getMatrixByID-methods
getMatrixByID,SQLiteConnection-method	getMatrixByID-methods
getMatrixByName	getMatrixByID-methods
getMatrixByName,character-method	getMatrixByID-methods
getMatrixByName,JASPAR2014-method	getMatrixByID-methods
getMatrixByName,SQLiteConnection-method	getMatrixByID-methods
getMatrixSet	getMatrixSet-methods
getMatrixSet,character-method	getMatrixSet-methods
getMatrixSet,JASPAR2014-method	getMatrixSet-methods
getMatrixSet,SQLiteConnection-method	getMatrixSet-methods
ID	XMatrixList-class
ID,XMatrix-method	XMatrix-class
ID,XMatrixList-method	XMatrixList-class
ID<-,XMatrix-method	XMatrix-class
initializeJASPARDB	deleteMatrixHavingID-methods
initializeJASPARDB,character-method	deleteMatrixHavingID-methods
initializeJASPARDB,JASPAR2014-method	deleteMatrixHavingID-methods
initializeJASPARDB,SQLiteConnection-method	deleteMatrixHavingID-methods
length,Site-method	XMatrix-class
length,SitePair-method	XMatrix-class
length,XMatrix-method	XMatrix-class
length-methods	XMatrix-class
Matrix	XMatrixList-class
Matrix,XMatrix-method	XMatrix-class
Matrix,XMatrixList-method	XMatrixList-class
Matrix<-,XMatrix-method	XMatrix-class
matrixClass	XMatrixList-class
matrixClass,XMatrix-method	XMatrix-class
matrixClass,XMatrixList-method	XMatrixList-class
matrixClass<-,XMatrix-method	XMatrix-class
matrixType	XMatrixList-class
matrixType,ICMatrix-method	XMatrix-class
matrixType,PFMatrix-method	XMatrix-class
matrixType,PWMatrix-method	XMatrix-class
matrixType,XMatrixList-method	XMatrixList-class
matrixType-methods	XMatrix-class
name	XMatrixList-class
name,XMatrix-method	XMatrix-class
name,XMatrixList-method	XMatrixList-class
name<-,XMatrix-method	XMatrix-class
PFMatrix	XMatrix-class
PFMatrix-class	XMatrix-class
PFMatrixList	XMatrixList-class
PFMatrixList-class	XMatrixList-class
reverseComplement,XMatrix-method	XMatrix-class
storeMatrix	deleteMatrixHavingID-methods
storeMatrix,character,PFMatrix-method	deleteMatrixHavingID-methods
storeMatrix,character,PFMatrixList-method	deleteMatrixHavingID-methods
storeMatrix,JASPAR2014,PFMatrix-method	deleteMatrixHavingID-methods
storeMatrix,JASPAR2014,PFMatrixList-method	deleteMatrixHavingID-methods
storeMatrix,SQLiteConnection,PFMatrix-method	deleteMatrixHavingID-methods
storeMatrix,SQLiteConnection,PFMatrixList-method	deleteMatrixHavingID-methods
storeMatrix-methods	deleteMatrixHavingID-methods
strand	XMatrixList-class
strand,XMatrix-method	XMatrix-class
strand,XMatrixList-method	XMatrixList-class
strand<-,XMatrix-method	XMatrix-class
tags	XMatrix-class
tags,XMatrix-method	XMatrix-class
tags,XMatrixList-method	XMatrixList-class
TFBSTools	TFBSTools-package
XMatrix	XMatrix-class
XMatrix-class	XMatrix-class
XMatrixList	XMatrixList-class
XMatrixList,list-method	XMatrixList-class
[,Site-method	XMatrix-class
[-methods	XMatrix-class
