Package: TEQC
Type: Package
Title: Quality control for target capture experiments
Version: 3.2.0
Date: 2013-01-02
Author: M. Hummel, S. Bonnin, E. Lowy, G. Roma
Maintainer: Manuela Hummel <manuela.hummel@crg.es>
Description: Target capture experiments combine hybridization-based (in solution or on microarrays)
	capture and enrichment of genomic regions of interest (e.g. the exome) with high throughput sequencing of the
	captured DNA fragments. This package provides functionalities for assessing and visualizing the 
	quality of the target enrichment process, like specificity and sensitivity of the capture, 
	per-target read coverage and so on. 
biocViews: QualityControl, Microarray, HighThroughputSequencing,
        Bioinformatics, Genetics
Depends: methods, BiocGenerics (>= 0.1.0), IRanges (>= 1.13.5),
        Rsamtools, hwriter
Imports: Biobase (>= 2.15.1)
License: GPL (>= 2)
LazyLoad: yes
Packaged: 2013-10-15 07:35:59 UTC; biocbuild
Built: R 3.0.2; ; 2013-10-15 16:14:01 UTC; windows
